PoplarV1, Main, Exploration, bibRecord, 000872

Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering.

Identifieur interne : 000872 ( Main/Exploration ); précédent : 000871; suivant : 000873

Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering.

Auteurs : Yunpeng Cao [République populaire de Chine] ; Xiaoxu Li [République populaire de Chine] ; Lan Jiang [République populaire de Chine]

Source :

Biomolecules [ 2218-273X ] ; 2019.

RBID : pubmed:31540505

Descripteurs français

KwdFr :
- Analyse de profil d'expression de gènes (méthodes), Analyse de séquence d'ARN (MeSH), Distribution tissulaire (MeSH), Duplication de gène (MeSH), Famille multigénique (MeSH), Fruit (génétique), Fruit (métabolisme), Lignine (biosynthèse), Lignine (génétique), Phylogenèse (MeSH), Protéines végétales (génétique), Protéines végétales (métabolisme), Pyrus (génétique), Pyrus (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Évolution moléculaire (MeSH).
MESH :
- biosynthèse : Lignine.
- génétique : Fruit, Lignine, Protéines végétales, Pyrus.
- métabolisme : Fruit, Protéines végétales, Pyrus.
- méthodes : Analyse de profil d'expression de gènes.
- Analyse de séquence d'ARN, Distribution tissulaire, Duplication de gène, Famille multigénique, Phylogenèse, Régulation de l'expression des gènes végétaux, Évolution moléculaire.

English descriptors

KwdEn :
- Evolution, Molecular (MeSH), Fruit (genetics), Fruit (metabolism), Gene Duplication (MeSH), Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Lignin (biosynthesis), Lignin (genetics), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Pyrus (genetics), Pyrus (metabolism), Sequence Analysis, RNA (MeSH), Tissue Distribution (MeSH).
MESH :
- chemical , biosynthesis : Lignin.
- genetics : Fruit, Lignin, Plant Proteins, Pyrus.
- metabolism : Fruit, Plant Proteins, Pyrus.
- methods : Gene Expression Profiling.
- Evolution, Molecular, Gene Duplication, Gene Expression Regulation, Plant, Multigene Family, Phylogeny, Sequence Analysis, RNA, Tissue Distribution.

Abstract

Stone cell content is an important factor affecting pear fruit flavor. Lignin, a major component of pear stone cells, hinders the quality and value of commercial fruit. The completion of the Chinese white pear (Pyrus bretschneideri) genome sequence provides an opportunity to perform integrative analysis of the genes encoding the eleven protein families (i.e., PAL, C4H, 4CL, HCT, C3H, CSE, CCoAOMT, CCR, F5H, COMT, and CAD) in the phenylpropanoid pathway. Here, a systematic study based on expression patterns and phylogenetic analyses was performed to identify the members of each gene family potentially involved in the lignification in the Chinese white pear. The phylogenetic analysis suggested that 35 P. bretschneideri genes belong to bona fide lignification clade members. Compared to other plants, some multigene families are expanded by tandem gene duplication, such as HCT, C3H, COMT, and CCR. RNA sequencing was used to study the expression patterns of the genes in different tissues, including leaf, petal, bud, sepal, ovary, stem, and fruit. Eighteen genes presented a high expression in fruit, indicating that these genes may be involved in the biosynthesis of lignin in pear fruit. Similarly to what has been observed for Populus trichocarpa, a bimolecular fluorescence complementation (BiFC) experiment indicated that P. bretschneideri C3H and C4H might also interact with each other to regulate monolignol biosynthesis in P. bretschneideri, ultimately affecting the stone cell content in pear fruits. The identification of the major genes involved in lignin biosynthesis in pear fruits provides the basis for the development of strategies to improve fruit quality.

DOI: 10.3390/biom9090504
PubMed: 31540505
PubMed Central: PMC6770946

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000699
to stream Main, to step Curation: 000699

Le document en format XML

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<term>Fruit (metabolism)</term>
<term>Gene Duplication (MeSH)</term>
<term>Gene Expression Profiling (methods)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Lignin (biosynthesis)</term>
<term>Lignin (genetics)</term>
<term>Multigene Family (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Pyrus (genetics)</term>
<term>Pyrus (metabolism)</term>
<term>Sequence Analysis, RNA (MeSH)</term>
<term>Tissue Distribution (MeSH)</term>
</keywords>
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<term>Analyse de séquence d'ARN (MeSH)</term>
<term>Distribution tissulaire (MeSH)</term>
<term>Duplication de gène (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Fruit (génétique)</term>
<term>Fruit (métabolisme)</term>
<term>Lignine (biosynthèse)</term>
<term>Lignine (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Pyrus (génétique)</term>
<term>Pyrus (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Évolution moléculaire (MeSH)</term>
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<keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Lignine</term>
</keywords>
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<term>Lignin</term>
<term>Plant Proteins</term>
<term>Pyrus</term>
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<term>Lignine</term>
<term>Protéines végétales</term>
<term>Pyrus</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Fruit</term>
<term>Plant Proteins</term>
<term>Pyrus</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Fruit</term>
<term>Protéines végétales</term>
<term>Pyrus</term>
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</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Evolution, Molecular</term>
<term>Gene Duplication</term>
<term>Gene Expression Regulation, Plant</term>
<term>Multigene Family</term>
<term>Phylogeny</term>
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<term>Distribution tissulaire</term>
<term>Duplication de gène</term>
<term>Famille multigénique</term>
<term>Phylogenèse</term>
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<front><div type="abstract" xml:lang="en">Stone cell content is an important factor affecting pear fruit flavor. Lignin, a major component of pear stone cells, hinders the quality and value of commercial fruit. The completion of the Chinese white pear (<i>Pyrus bretschneideri</i>
) genome sequence provides an opportunity to perform integrative analysis of the genes encoding the eleven protein families (i.e., <i>PAL</i>
, <i>C4H</i>
, <i>4CL</i>
, <i>HCT</i>
, <i>C3H</i>
, <i>CSE</i>
, <i>CCoAOMT</i>
, <i>CCR</i>
, <i>F5H</i>
, <i>COMT,</i>
 and <i>CAD</i>
) in the phenylpropanoid pathway. Here, a systematic study based on expression patterns and phylogenetic analyses was performed to identify the members of each gene family potentially involved in the lignification in the Chinese white pear. The phylogenetic analysis suggested that 35 <i>P. bretschneideri</i>
 genes belong to bona fide lignification clade members. Compared to other plants, some multigene families are expanded by tandem gene duplication, such as <i>HCT</i>
, <i>C3H</i>
, <i>COMT</i>
, and <i>CCR</i>
. RNA sequencing was used to study the expression patterns of the genes in different tissues, including leaf, petal, bud, sepal, ovary, stem, and fruit. Eighteen genes presented a high expression in fruit, indicating that these genes may be involved in the biosynthesis of lignin in pear fruit. Similarly to what has been observed for <i>Populus trichocarpa</i>
, a bimolecular fluorescence complementation (BiFC) experiment indicated that <i>P. bretschneideri C3H</i>
 and <i>C4H</i>
 might also interact with each other to regulate monolignol biosynthesis in <i>P. bretschneideri</i>
, ultimately affecting the stone cell content in pear fruits. The identification of the major genes involved in lignin biosynthesis in pear fruits provides the basis for the development of strategies to improve fruit quality.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31540505</PMID>
<DateCompleted><Year>2020</Year>
<Month>07</Month>
<Day>14</Day>
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<DateRevised><Year>2020</Year>
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<Day>14</Day>
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<Issue>9</Issue>
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<Month>09</Month>
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<ArticleTitle>Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">E504</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.3390/biom9090504</ELocationID>
<Abstract><AbstractText>Stone cell content is an important factor affecting pear fruit flavor. Lignin, a major component of pear stone cells, hinders the quality and value of commercial fruit. The completion of the Chinese white pear (<i>Pyrus bretschneideri</i>
) genome sequence provides an opportunity to perform integrative analysis of the genes encoding the eleven protein families (i.e., <i>PAL</i>
, <i>C4H</i>
, <i>4CL</i>
, <i>HCT</i>
, <i>C3H</i>
, <i>CSE</i>
, <i>CCoAOMT</i>
, <i>CCR</i>
, <i>F5H</i>
, <i>COMT,</i>
 and <i>CAD</i>
) in the phenylpropanoid pathway. Here, a systematic study based on expression patterns and phylogenetic analyses was performed to identify the members of each gene family potentially involved in the lignification in the Chinese white pear. The phylogenetic analysis suggested that 35 <i>P. bretschneideri</i>
 genes belong to bona fide lignification clade members. Compared to other plants, some multigene families are expanded by tandem gene duplication, such as <i>HCT</i>
, <i>C3H</i>
, <i>COMT</i>
, and <i>CCR</i>
. RNA sequencing was used to study the expression patterns of the genes in different tissues, including leaf, petal, bud, sepal, ovary, stem, and fruit. Eighteen genes presented a high expression in fruit, indicating that these genes may be involved in the biosynthesis of lignin in pear fruit. Similarly to what has been observed for <i>Populus trichocarpa</i>
, a bimolecular fluorescence complementation (BiFC) experiment indicated that <i>P. bretschneideri C3H</i>
 and <i>C4H</i>
 might also interact with each other to regulate monolignol biosynthesis in <i>P. bretschneideri</i>
, ultimately affecting the stone cell content in pear fruits. The identification of the major genes involved in lignin biosynthesis in pear fruits provides the basis for the development of strategies to improve fruit quality.</AbstractText>
</Abstract>
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</AffiliationInfo>
<AffiliationInfo><Affiliation>College of Life Sciences, Anhui Agricultural University, Hefei 230036, China. xfcypeng@126.com.</Affiliation>
</AffiliationInfo>
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<AffiliationInfo><Affiliation>Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China. 82101171073@caas.cn.</Affiliation>
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<AffiliationInfo><Affiliation>School of Economics and Law, Chaohu University, Hefei 238000, China. jiang_lan@126.com.</Affiliation>
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</MeshHeading>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
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</MeshHeading>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D031989" MajorTopicYN="N">Pyrus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName>
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<MeshHeading><DescriptorName UI="D014018" MajorTopicYN="N">Tissue Distribution</DescriptorName>
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<Keyword MajorTopicYN="Y">pear</Keyword>
<Keyword MajorTopicYN="Y">phylogenetic analysis</Keyword>
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<Month>04</Month>
<Day>21</Day>
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<Month>9</Month>
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<ArticleId IdType="doi">10.3390/biom9090504</ArticleId>
<ArticleId IdType="pmc">PMC6770946</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>J Mol Evol. 2010 Sep;71(3):202-18</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20721545</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2004 Jun;16(6):1446-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15161961</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Protoc. 2016 Sep;11(9):1650-67</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27560171</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Plant Biol. 2003;54:519-46</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14503002</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2002 Apr;30(1):33-45</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11967091</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2016 Jul 8;44(W1):W242-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27095192</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2008;179(4):987-1003</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18627494</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2012 Apr;40(7):e49</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22217600</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):6619-23</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9618461</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2015 Jun;206(4):1364-77</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25250741</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2001 Sep;27(5):455-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11576429</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2013 Apr;30(4):772-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23329690</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Signal Behav. 2009 Feb;4(2):158-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19649200</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Trends Plant Sci. 2003 Dec;8(12):576-81</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14659706</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2006 Jan;140(1):30-48</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16377748</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2004 Nov;40(3):428-38</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15469500</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2013 Jul;41(12):e121</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23598997</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2011 Mar 18;12:79</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21418570</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2000 Aug;123(4):1363-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10938354</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2001 Dec;127(4):1513-23</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11743096</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytochemistry. 2001 Jul;57(6):993-1003</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11423146</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2000 May;22(3):223-34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10849340</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 1992 Nov;4(11):1413-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">1477555</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Plant Biol. 2017 Sep 19;17(1):156</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28927374</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2004 Jan 23;279(4):2600-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14607837</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Theor Biol. 2019 Feb 7;462:158-170</Citation>
<ArticleIdList><ArticleId IdType="pubmed">30412698</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2003 Jan 3;278(1):95-103</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12381722</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2009 Oct 08;10 Suppl 11:S3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19811687</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2010 Jul;153(3):895-905</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20472751</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2003 Nov;133(3):1051-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14612585</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2017 Nov;175(3):1040-1057</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28878037</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Crit Rev Biochem Mol Biol. 2003;38(4):305-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14551235</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Mol Sci. 2018 Jan 24;19(2):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29364145</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Eur J Biochem. 1984 Mar 1;139(2):259-65</Citation>
<ArticleIdList><ArticleId IdType="pubmed">6365550</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 2016 Jun;86(5):363-75</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27037613</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2013 Sep 6;341(6150):1103-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23950498</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):8955-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10430877</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Hortic Res. 2019 Mar 1;6:34</Citation>
<ArticleIdList><ArticleId IdType="pubmed">30854211</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytochemistry. 2001 Aug;57(7):1187-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11430991</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2010 Aug;153(4):1526-38</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20566705</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2009 Jun;150(2):621-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19386808</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 2001 Sep 28;276(39):36566-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11429408</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 1993 May;102(1):71-83</Citation>
<ArticleIdList><ArticleId IdType="pubmed">8108506</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 1995 Jun;108(2):459-67</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7610157</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21253-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22160716</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12328-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10535921</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2005 Jul;17(7):2059-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15937231</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Cell. 2004 Oct;16(10):2749-71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15377757</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2015 Jan;32(1):268-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25371430</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Plant Sci. 2016 Apr 29;7:577</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27200050</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 1999 Jul;19(1):9-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10417722</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Opin Plant Biol. 2002 Jun;5(3):224-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11960740</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Plant Sci. 2016 Dec 09;7:1874</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28018406</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2001 Sep;17(9):847-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11590104</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22127870</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Ann Bot. 2015 Jun;115(7):1053-74</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25878140</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2013 Feb;23(2):396-408</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23149293</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2015 Jun;206(4):1297-313</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25684249</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Plant Sci. 2015 Nov 04;6:965</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26583030</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Sci. 2011 Sep;181(3):249-57</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21763535</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant J. 1997 Mar;11(3):429-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9107033</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Plant Biol. 2009 Mar 06;9:26</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19267902</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2002 Oct;130(2):796-807</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12376645</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2003 Jun;132(2):848-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12805615</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Plant Sci. 2016 Nov 24;7:1750</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27933074</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biol Chem. 1989 Aug 25;264(24):14486-92</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2760071</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytochemistry. 2003 Nov;64(6):1097-112</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14568076</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering.

Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering.

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